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INHALTE

Jun.-Prof. Dr.-Ing. Daniel Baumgarten

Head of Multimodal data analysis in biomedical engineerung Group

Personal information

- Junior professor and chair of multimodal data analysis group

Education

2006 - 2011Technische Universität Ilmenau: Ph.D. in Engineering (Dr.-Ing.)
2000 - 2006Technische Universität Ilmenau: Diploma in Engineering (Dipl.-Ing.)

Work / Scientific Experience

07.2013 – presentJunior-Professorship and chair of multimodal data analysis in biomedical engineering group, Technische Universität Ilmenau, Germany
2011 – 2013Post-Doctoral Position, Institute for Biomedical Engineering and Informatics, Technische Universität Ilmenau, Germany
2012Visiting Scientist, Centre for Clinical Science and Engineering, Universiti Teknologi Malaysia, Johor Bahru, Malaysia
2009 – 2011Research assistant (PhD student), Biomagnetic Centre, University Hospital Jena, Germany
2007 – 2011Research assistant (PhD student), Institute for Biomedical Engineering and Informatics, Technische Universität Ilmenau, Germany
2006 – 2008Research assistant (PhD student), Institute for Solid State Physics, Friedrich-Schiller-University Jena, Germany
2006 – 2008Freelance software engineer, Carl Zeiss Meditec AG, Jena, Germany

Professional Activities:

  • Reviewer for the German Research Foundation (DFG)
  • Reviewer for Medical & Biological Engineering & Computing, IEEE Transactions on Biomedical Engineering, IEEE Transactions on Magnetics, Biomedical Engineering/Biomedizinische Technik
  • Member of the board of review for the professorship „Biomedizinische Technik“ at Technische Universität Ilmenau (2004/05)
  • President of HSC Erfurt e. V. in an honorary capacity

Membership in Scientific Societies

  • IEEE, Engineering in Medicine and Biology Society
  • German Society for Biomedical Engineering (DGBMT), Fachausschuss „Magnetische Methoden in der Medizin“
    Society of German Engineers (VDI),

Research & Projects

Research areas:

  • Multimodal data analysis in biomedical engineering
  • Medical imaging and image processing
  • Inverse methods for the reconstruction of spatially distributed electric and magnetic sources
  • Medical application of magnetic nanoparticles

Completed Research Projects:

  • Biological diagnostic tools using microsystems and supersensitive magnetic detection (BIODIAGNOSTICS)
  • Geomagnetisches Prospektionssystem für Bodenuntersuchungen

List of original publications

  • R. Eichardt, D. Baumgarten, B. Petković, F. Wiekhorst, L. Trahms und J. Haueisen: Adapting source grid parameters to improve the condition of the magnetostatic linear inverse problem of estimating nanoparticle distributions. Medical and Biological Engineering and Computing, Vol 50, Nr 10, S. 1081-1089, 2012;
  • G. Crevecoeur, D. Baumgarten, U. Steinhoff, J. Haueisen, L. Trahms, L. Dupré: Advancements in magnetic nanoparticle reconstruction using sequential activation of excitation coil arrays using magnetorelaxometry. IEEE Transactions on Magnetics, Vol 48, Nr 4, S. 1313–1316, 2012;
  • U. Steinhoff, M. Liebl, M. Bauer, F. Wiekhorst, L. Trahms, D. Baumgarten, J. Haueisen: Spatially Resolved Measurement of Magnetic Nanoparticles Using Inhomogeneous Excitation Fields in the Linear Susceptibility Range. Springer Proceedings in Physics; Vol. 140, S. 295-300, 2012;
  • S. Biller, D. Baumgarten, J. Haueisen: A novel marker design for magnetic marker monitoring in the human gastrointestinal tract. IEEE Transactions on Biomedical Engineering, Vol. 48, Nr 12, S. 3368–3375, 2011;
  • Baumgarten, D.: Computational and experimental investigations on the imaging of magnetic nanoparticles based on magnetorelaxometry and minimum norm estimations for biomedical applications, DISSERTATION, Shaker-Verlag, 2011;
  • U. Steinhoff, F. Wiekhorst, D. Baumgarten, J. Haueisen, L. Trahms: Bildgebung magnetischer Nanopartikel basierend auf Magnetrelaxometrie mit sequentieller Aktivierung inhomogener Anregungsfelder. Biomedizinische Technik, Vol 55, S. 22-25, 2010;
  • D. Baumgarten, J. Haueisen: Imaging of magnetic nanoparticles based on Magnetorelaxation and minimum norm estimations. In T. Buzug et al. (Eds.): Magnetic Nanoparticles: Particle Science, Imaging Technology, and Clinical Applications, 191-197. World Scientific Publishing Company, 2010;
  • Baumgarten, D., Haueisen J.: A Spatio-Temporal Approach for the Solution of the Inverse Problem in the Reconstruction of Magnetic Nanoparticle Distributions. IEEE Transactions on Magnetics, vol. 46, no. 8, August 2010: 3496-3499;
  • D. Baumgarten, M. Liehr, J. Haueisen: Imaging of magnetic nanoparticle loaded rat organs using a 16 channel micro squid system. In O. Dössel and W.C. Schlegel (Eds.): IFMBE Proceedings, 25(VII):366–369. Springer Berlin Heidelberg, 2009;
  • F. Wiekhorst, D. Baumgarten, W. Haberkorn, U. Steinhoff, J. Haueisen, M. Bär, L. Trahms: A physical phantom modeling extended magnetic nanoparticle distributions in biological systems. In O. Dössel and W.C. Schlegel (Eds.): IFMBE Proceedings, 25(VII):293–296. Springer Berlin Heidelberg, 2009;
  • R. Eichardt, D. Baumgarten, L. Di Rienzo, S. Linzen, V. Schultze, J. Haueisen: Localisation of buried ferromagnetic objects based on minimum-norm-estimations a simulation study. COMPEL, 28(5):1323–1333, 2009;
  • D. Baumgarten, M. Liehr, F. Wiekhorst, U. Steinhoff, P. Münster, P. Miethe, L. Trahms, J. Haueisen: Magnetic Nanoparticle Imaging by means of Minimum Norm Estimates from Remanence Measurements. Medical and Biological Engineering and Computing, 46(12):1177–1185, 2008;
  • Baumgarten D., Steinhoff U, Haberkorn W, Wiekhorst F, Trahms L, Haueisen J: Minimum Norm and Multipole Based Algorithms for the Reconstruction of Magnetic Nanoparticle Distributions in Biological Tissue. Submitted to the International on Biomagnetism 2008 (BIOMAG08), Aug 25-29, Sapporo, Japan, 2008; 
  • Baumgarten D., Liehr M, Wiekhorst F, Steinhoff U, Münster P, Trahms L, Haueisen J: Estimation of Magnetic Nanoparticle Distributions with a Minimum Norm Approach: Determination of relevant Parameters. Submitted to the International on Biomagnetism 2008 (BIOMAG08), Aug 25-29, Sapporo, Japan, 2008;
  • Baumgarten D., Doering A: Registrierung von Aufnahmen des Augenhintergrundes zur Erstellung großflächiger Kompositionsaufnahmen. Biomed Tech, Vol. 52, Nr. 6, S. 365–374, 2007;
  • Baumgarten D., Liehr M, Haueisen J: Magnetic Imaging of Nanoparticles using Minimum Norm Algorithms. Joint Meeting of the 6th International Symposium on Noninvasive Functional Source Imaging of the Brain and Heart and the International Conference on Functional Biomedical Imaging, Zhejiang University Hangzhou (China), 12.-14.10.2007; 
  • Baumgarten D., Liehr M, Haueisen J: Magnetic Imaging of Nanoparticles using Minimum Norm Algorithms. In Proceedings 41. Jahrestagung der Deutschen Gesellschaft für Biomedizinische Technik (DGBMT) im VDE, Aachen, Deutschland, 26.-29.09.2007; 
  • Baumgarten D., Doering A, Trost M: Composition of Wide Field Fundus Images Using a Non-Linear Registration Technique. ARVO’s 2007 Annual Meeting, Fort Lauderdale (Florida), 06.-10.05.2007; 
  • Baumgarten, D., Doering, A., Trost, M.: Registrierung von Aufnahmen des Augenhintergrundes zur Erstellung großflächiger Kompositionsaufnahmen. Workshop Bildverarbeitung für die Medizin, München, Deutschland, 2007; 
  • Baumgarten, D.: Registrierung von Aufnahmen des Augenhintergrundes zur Erstellung großflächiger Kompositionsaufnahmen. Diplomarbeit TU Ilmenau, 2006;