Publikationen an der Fakultät für Informatik und Automatisierung ab 2015

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Jibril, Muhammad Attahir; Götze, Philipp; Broneske, David; Sattler, Kai-Uwe
Selective caching : a persistent memory approach for multi-dimensional index structures. - In: Distributed and parallel databases, ISSN 1573-7578, Bd. 40 (2022), 1, S. 47-66
Special Issue on Self-Managing and Hardware-Optimized Database Systems 2020

https://doi.org/10.1007/s10619-021-07327-0
Sonnekalb, Tim; Heinze, Thomas S.; Mäder, Patrick
Deep security analysis of program code : a systematic literature review. - In: Empirical software engineering, ISSN 1573-7616, Bd. 27 (2022), 1, 2, insges. 39 S.

Due to the continuous digitalization of our society, distributed and web-based applications become omnipresent and making them more secure gains paramount relevance. Deep learning (DL) and its representation learning approach are increasingly been proposed for program code analysis potentially providing a powerful means in making software systems less vulnerable. This systematic literature review (SLR) is aiming for a thorough analysis and comparison of 32 primary studies on DL-based vulnerability analysis of program code. We found a rich variety of proposed analysis approaches, code embeddings and network topologies. We discuss these techniques and alternatives in detail. By compiling commonalities and differences in the approaches, we identify the current state of research in this area and discuss future directions. We also provide an overview of publicly available datasets in order to foster a stronger benchmarking of approaches. This SLR provides an overview and starting point for researchers interested in deep vulnerability analysis on program code.



https://doi.org/10.1007/s10664-021-10029-x
Dutz, Silvio; Weidner, Andreas; Lühe, Moritz von der; Gräfe, Christine; Biehl, Philip; Demut, Johanna; Warncke, Paul; Jungmann, Sandra; Fischer, Dagmar; Schacher, Felix; Clement, Joachim H.
Hybrid nanomaterials of biomolecule corona coated magnetic nanoparticles and their interaction with biological systems. - In: Physical sciences reviews, ISSN 2365-659X, Bd. 7 (2022), 11, S. 1311-1344

Magnetic nanoparticles (MNPs) are interesting for various applications in medicine. If administered to a biological system like the human body, a so-called biomolecule corona is formed on the surface of the particles, which highly determines the biological fate of the particles. To elucidate whether a preconditioning of the MNPs by incubation with biomolecules influences biocompatibility and bioavailability, the formation of such a corona was investigated in more detail. For this, the influence of particle characteristics, e.g., surface charge, as well as various incubation parameters on the resulting corona was investigated. It was found that the biomolecule corona is formed immediately after bringing together the particles with the biomolecule source. By variation of the biomolecule content of the incubation medium, the size of the corona can be modulated. Regarding the interaction of the nanoparticles with cells, it was shown that the presence of a biomolecule corona reduces the interaction and that a more pronounced biomolecule corona leads to a reduced uptake of the magnetic nanohybrids into the cells. Cell viability tests confirmed biocompatibility of the biomolecule-coated particles. A more pronounced corona promotes a higher cell viability. By using a shell-less hen's egg model, no or reduced adverse effects of all biomolecule-coated MNP for this in vivo test were found. Resulting from these investigations, we were able to demonstrate that our newly developed nanohybrids significantly reduce in vivo toxicity compared to uncoated MNPs.



https://doi.org/10.1515/psr-2019-0110
Gräfe, Christine; Müller, Elena; Gresing, Lennart; Weidner, Andreas; Radon, Patricia; Friedrich, Ralf P.; Alexiou, Christoph; Wiekhorst, Frank; Dutz, Silvio; Clement, Joachim
Magnetic hybrid materials interact with biological matrices. - In: Physical sciences reviews, ISSN 2365-659X, Bd. 7 (2022), 12, S. 1443-1500

Magnetic hybrid materials are a promising group of substances. Their interaction with matrices is challenging with regard to the underlying physical and chemical mechanisms. But thinking matrices as biological membranes or even structured cell layers they become interesting with regard to potential biomedical applications. Therefore, we established in vitro blood-organ barrier models to study the interaction and processing of superparamagnetic iron oxide nanoparticles (SPIONs) with these cellular structures in the presence of a magnetic field gradient. A one-cell-type-based blood-brain barrier model was used to investigate the attachment and uptake mechanisms of differentially charged magnetic hybrid materials. Inhibition of clathrin-dependent endocytosis and F-actin depolymerization led to a dramatic reduction of cellular uptake. Furthermore, the subsequent transportation of SPIONs through the barrier and the ability to detect these particles was of interest. Negatively charged SPIONs could be detected behind the barrier as well as in a reporter cell line. These observations could be confirmed with a two-cell-type-based blood-placenta barrier model. While positively charged SPIONs heavily interact with the apical cell layer, neutrally charged SPIONs showed a retarded interaction behavior. Behind the blood-placenta barrier, negatively charged SPIONs could be clearly detected. Finally, the transfer of the in vitro blood-placenta model in a microfluidic biochip allows the integration of shear stress into the system. Even without particle accumulation in a magnetic field gradient, the negatively charged SPIONs were detectable behind the barrier. In conclusion, in vitro blood-organ barrier models allow the broad investigation of magnetic hybrid materials with regard to biocompatibility, cell interaction, and transfer through cell layers on their way to biomedical application.



https://doi.org/10.1515/psr-2019-0114
Hofmann, Martin; Mäder, Patrick
Synaptic scaling - an artificial neural network regularization inspired by nature. - In: IEEE transactions on neural networks and learning systems, ISSN 2162-2388, Bd. 33 (2022), 7, S. 3094-3108

Nature has always inspired the human spirit and scientists frequently developed new methods based on observations from nature. Recent advances in imaging and sensing technology allow fascinating insights into biological neural processes. With the objective of finding new strategies to enhance the learning capabilities of neural networks, we focus on a phenomenon that is closely related to learning tasks and neural stability in biological neural networks, called homeostatic plasticity. Among the theories that have been developed to describe homeostatic plasticity, synaptic scaling has been found to be the most mature and applicable. We systematically discuss previous studies on the synaptic scaling theory and how they could be applied to artificial neural networks. Therefore, we utilize information theory to analytically evaluate how mutual information is affected by synaptic scaling. Based on these analytic findings, we propose two flavors in which synaptic scaling can be applied in the training process of simple and complex, feedforward, and recurrent neural networks. We compare our approach with state-of-the-art regularization techniques on standard benchmarks. We found that the proposed method yields the lowest error in both regression and classification tasks compared to previous regularization approaches in our experiments across a wide range of network feedforward and recurrent topologies and data sets.



https://doi.org/10.1109/TNNLS.2021.3050422
Cierpka, Christian; Barnkob, Rune; Sachs, Sebastian; Chen, Minqian; Mäder, Patrick; Rossi, Massimiliano
On the uncertainty of defocus methods for 3D particle tracking velocimetry. - In: International Symposium on Particle Image Velocimetry, ISSN 2769-7576, Bd. 1 (2021), 1, insges. 2 S.

Defocus methods have become more and more popular for the estimation of the 3D position of particles in flows (Cierpka and Kähler, 2011; Rossi and Kähler, 2014). Typically the depth positions of particles are determined by the defocused particle images using image processing algorithms. As these methods allow the determination of all components of the velocity vector in a volume using only a single optical access and a single camera, they are often used in, but not limited to microfluidics. Since almost no additional equipment is necessary they are low-cost methods that are meanwhile widely applied in different fields. To overcome the ambiguity of perfect optical systems, often a cylindrical lens is introduced in the optical system which enhances the differences of the obtained particle images for different depth positions. However, various methods are emerging and it is difficult for non-experienced users to judge what method might be best suited for a given experimental setup. Therefore, the aim of the presentation is a thorough evaluation of the performance of general advanced methods, including also recently presented neural networks (Franchini and Krevor, 2020; König et al., 2020) based on typical images.



https://doi.org/10.18409/ispiv.v1i1.80
Mäder, Patrick; Poll, Constanze; Hüther, Jonas; Jeschke, Sebastian; Otto, Henning; Cierpka, Christian
SmartPIV - an app for flow visualization by cross-correlation and optical flow using smartphones. - In: International Symposium on Particle Image Velocimetry, ISSN 2769-7576, Bd. 1 (2021), 1, insges. 2 S.

In recent years smartphones considerably changed our communication and are used on a daily (or even every minute) basis especially by students without any difficulties. Fluid flows also belong to our daily experiences. However, the education of the basic principles of fluid mechanics is sometimes cumbersome due to its non-linear nature. This problem may be tackled in practical sessions applying flow visualization techniques in wind or water tunnels and directly learn from own observations. Nowadays, often optical methods like particle imaging velocimetry (PIV) or particle tracking velocimetry (PTV) are used for these purposes. A typical PIV/PTV setup consists of a (double)pulse laser, a scientific camera and a synchronization device. The costs for this equipment can easily add up to more than 100,000 euros and the installations and set up of the systems requires experiences and is complex. For these reasons Universities often only offer practical courses for a small amount of students and the students may not be allowed to use and set up the systems by their own as the equipment is also needed for scientific research. Due to the COVID-19 pandemic it is also often not allowed to share equipment or even to work in larger groups during practical sessions.



https://doi.org/10.18409/ispiv.v1i1.78
Hugenroth, Christopher;
Separating regular languages over infinite words with respect to the Wagner hierarchy. - In: 41st IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, (2021), S. 46:1-46:13

We investigate the separation problem for regular ω-languages with respect to the Wagner hierarchy where the input languages are given as deterministic Muller automata (DMA). We show that a minimal separating DMA can be computed in exponential time and that some languages require separators of exponential size. Further, we show that in this setting it can be decided in polynomial time whether a separator exists on a certain level of the Wagner hierarchy and that emptiness of the intersection of two languages given by DMAs can be decided in polynomial time. Finally, we show that separation can also be decided in polynomial time if the input languages are given as deterministic parity automata.



https://doi.org/10.4230/LIPIcs.FSTTCS.2021.46
Franke, Henning; Kucera, Paul; Kuners, Julian; Reinhold, Tom; Grabmann, Martin; Mäder, Patrick; Seeland, Marco; Gläser, Georg
Trash or treasure? : machine-learning based PCB layout anomaly detection with AnoPCB. - In: SMACD / PRIME 2021, (2021), S. 48-51

https://ieeexplore.ieee.org/document/9547913