Publications at the Department of Mathematics and Natural Sciences from 2019

Results: 907
Created on: Mon, 20 May 2024 23:07:24 +0200 in 0.0823 sec


Hülser, Tobias; Köster, Felix; Lüdge, Kathy; Jaurigue, Lina
Deriving task specific performance from the information processing capacity of a reservoir computer. - In: Nanophotonics, ISSN 2192-8614, Bd. 12 (2023), 5, S. 937-947

In the reservoir computing literature, the information processing capacity is frequently used to characterize the computing capabilities of a reservoir. However, it remains unclear how the information processing capacity connects to the performance on specific tasks. We demonstrate on a set of standard benchmark tasks that the total information processing capacity correlates poorly with task specific performance. Further, we derive an expression for the normalized mean square error of a task as a weighted function of the individual information processing capacities. Mathematically, the derivation requires the task to have the same input distribution as used to calculate the information processing capacities. We test our method on a range of tasks that violate this requirement and find good qualitative agreement between the predicted and the actual errors as long as the task input sequences do not have long autocorrelation times. Our method offers deeper insight into the principles governing reservoir computing performance. It also increases the utility of the evaluation of information processing capacities, which are typically defined on i.i.d. input, even if specific tasks deliver inputs stemming from different distributions. Moreover, it offers the possibility of reducing the experimental cost of optimizing physical reservoirs, such as those implemented in photonic systems.



https://doi.org/10.1515/nanoph-2022-0415
Link, Steffen; Dimitrova, Anna; Krischok, Stefan; Ivanov, Svetlozar
Electrochemical deposition of silicon in organic electrolytes. - In: Reference module in chemistry, molecular sciences and chemical engineering, (2023)

Electrodeposition is a versatile instrumental technique, already applied in many industrial fields. However, the deposition of silicon and other reactive elements is still challenging and requires further research and improvement. Accomplishing an efficient electrodeposition of silicon at room temperature is very attractive due to the high number of manufacturing technologies that would benefit from this approach. This work provides an overview of the electrochemical approaches for silicon deposition performed in organic electrolytes. The main factors that impact this process are individually discussed and exemplified with appropriately updated literature sources. Furthermore, the previously available research on characterization of electrodeposited silicon containing layers is provided. These studies are presented in the context of better understanding the structure, composition, and functional properties of the deposited silicon material, which may attract the attention of young academic scientists and process engineers.



https://doi.org/10.1016/B978-0-323-85669-0.00005-2
Prylutskyy, Yuriy; Nozdrenko, Dmytro; Gonchar, Olga; Prylutska, Svitlana; Bogutska, Kateryna; Täuscher, Eric; Scharff, Peter; Ritter, Uwe
The residual effect of C60 fullerene on biomechanical and biochemical markers of the muscle soleus fatigue development in rats. - In: Journal of nanomaterials, ISSN 1687-4129, Bd. 2023 (2023), e2237574, S. 1-11

Muscle fatigue as a defense body mechanism against overload is a result of the products of incomplete oxygen oxidation such as reactive oxygen species. Hence, C60 fullerene as a powerful nanoantioxidant can be used to speed up the muscle recovery process after fatigue. Here, the residual effect of C60 fullerene on the biomechanical and biochemical markers of the development of muscle soleus fatigue in rats for 2 days after 5 days of its application was studied. The known antioxidant N-acetylcysteine (NAC) was used as a comparison drug. The atomic force microscopy to determine the size distribution of C60 fullerenes in an aqueous solution, the tensiometry of skeletal muscles, and the biochemical analysis of their tissues and rat blood were used in this study. It was found that after the cessation of NAC injections, the value of the integrated muscle power is already slightly different from the control (5%-7%) on the first day, and on the second day, it does not significantly differ from the control. At the same time, after the cessation of C60 fullerene injections, its residual effect was 45%-50% on the first day, and 17%-23% of the control on the second one. A significant difference (more than 25%) between the pro- and antioxidant balance in the studied muscles and blood of rats after the application of C60 fullerene and NAС plays a key role in the long-term residual effect of C60 fullerene. This indicates prolonged kinetics of C60 fullerenes elimination from the body, which contributes to their long-term (at least 2 days) compensatory activation of the endogenous antioxidant system in response to muscle stimulation, which should be considered when developing new therapeutic agents based on these nanoparticles.



https://doi.org/10.1155/2023/2237574
Behrndt, Jussi; Schmitz, Philipp; Teschl, Gerald; Trunk, Carsten
Relative oscillation theory and essential spectra of Sturm-Liouville operators. - In: Journal of mathematical analysis and applications, ISSN 1096-0813, Bd. 518 (2023), 1, 126673

https://doi.org/10.1016/j.jmaa.2022.126673
Aigner-Horev, Elad; Person, Yury
An asymmetric random Rado theorem: 1-statement. - In: Journal of combinatorial theory, Bd. 193 (2023), 105687, S. 1-32

A classical result by Rado characterises the so-called partition-regular matrices A, i.e. those matrices A for which any finite colouring of the positive integers yields a monochromatic solution to the equation Ax=0. We study the asymmetric random Rado problem for the (binomial) random set [n]p in which one seeks to determine the threshold for the property that any r-colouring, r≥2, of the random set has a colour i∈[r] admitting a solution for the matrical equation Aix=0, where A1,…,Ar are predetermined partition-regular matrices pre-assigned to the colours involved. We prove a 1-statement for the asymmetric random Rado property. In the symmetric setting our result retrieves the 1-statement of the symmetric random Rado theorem established in a combination of results by Rödl and Ruciânski [34] and by Friedgut, Rödl and Schacht [11]. We conjecture that our 1-statement in fact unveils the threshold for the asymmetric random Rado property, yielding a counterpart to the so-called Kohayakawa-Kreuter conjecture concerning the threshold for the asymmetric random Ramsey problem in graphs. We deduce the aforementioned 1-statement for the asymmetric random Rado property after establishing a broader result generalising the main theorem of Friedgut, Rödl and Schacht from [11]. The latter then serves as a combinatorial framework through which 1-statements for Ramsey-type problems in random sets and (hyper)graphs alike can be established in the asymmetric setting following a relatively short combinatorial examination of certain hypergraphs. To establish this framework we utilise a recent approach put forth by Mousset, Nenadov and Samotij [26] for the Kohayakawa-Kreuter conjecture.



https://doi.org/10.1016/j.jcta.2022.105687
Eichfelder, Gabriele; Grüne, Lars; Krügel, Lisa; Schießl, Jonas
Relaxed dissipativity assumptions and a simplified algorithm for multiobjective MPC. - In: Computational optimization and applications, ISSN 1573-2894, Bd. 86 (2023), 3, S. 1081-1116

We consider nonlinear model predictive control (MPC) with multiple competing cost functions. In each step of the scheme, a multiobjective optimal control problem with a nonlinear system and terminal conditions is solved. We propose an algorithm and give performance guarantees for the resulting MPC closed loop system. Thereby, we significantly simplify the assumptions made in the literature so far by assuming strict dissipativity and the existence of a compatible terminal cost for one of the competing objective functions only. We give conditions which ensure asymptotic stability of the closed loop and, what is more, obtain performance estimates for all cost criteria. Numerical simulations on various instances illustrate our findings. The proposed algorithm requires the selection of an efficient solution in each iteration, thus we examine several selection rules and their impact on the results. and we also examine numerically how different selection rules impact the results



https://doi.org/10.1007/s10589-022-00398-4
Eichfelder, Gabriele; Rocktäschel, Stefan
Solving set-valued optimization problems using a multiobjective approach. - In: Optimization, ISSN 1029-4945, Bd. 72 (2023), 3, S. 789-820

Set-valued optimization using the set approach is a research topic of high interest due to its practical relevance and numerous interdependencies to other fields of optimization. However, it is a very difficult task to solve these optimization problems even for specific cases. In this paper, we study set-valued optimization problems and develop a multiobjective optimization problem that is strongly related to it. We prove that the set of weakly minimal solutions of this subproblem is closely related to the set of weakly minimal elements of the set-valued optimization problem and that these sets can get arbitrarily close in a certain sense. Subsequently, we introduce a concept of approximations of the solution set of the set-valued optimization problem. We define a quality measure in the image space that can be used to compare finite approximations of this kind and outline a procedure to enhance a given approximation. We conclude the paper with some numerical examples.



https://doi.org/10.1080/02331934.2021.1988596
Apte, Gurunath; Hirtz, Michael Manfred; Nguyen, Thi-Huong
FluidFM-based fabrication of nanopatterns: promising surfaces for platelet storage application. - In: ACS applied materials & interfaces, ISSN 1944-8252, Bd. 14 (2022), 21, S. 24133-24143

Platelets are cell fragments from megakaryocytes devoid of the cell nucleus. They are highly sensitive and easily activated by nonphysiological surfaces. Activated platelets have an intrinsic mechanism to release various proteins that participate in multiple pathways, initiating the platelet activation cascade. Surface-induced platelet activation is a challenge encountered during platelet storage, which eventually leads to aggregation of platelets and can thereby result in the degradation of the platelet concentrates. We have previously reported that surface-induced platelet activation can be minimized by either modifying their contact surfaces with polymers or introducing nanogroove patterns underneath the platelets. Here, we investigated the response of platelets to various nanotopographical surfaces printed using fluidic force microscopy (FluidFM). We found that the hemispherical array (grid) and hexagonal tile (hive) structures caused a reduction of surface stiffness, which leads to an inhibition of platelet adhesion. Our results reveal that nanopatterns enable the inhibition of platelet activation on surfaces, thus implying that development in nanotexturing of storage bags can extend the lifetime of platelet concentrates.



https://doi.org/10.1021/acsami.2c03459
Chen, Li-Yu; Khan, Nida; Lindenbauer, Annerose; Nguyen, Thi-Huong
When will Fondaparinux induce thrombocytopenia?. - In: Bioconjugate chemistry, ISSN 1520-4812, Bd. 33 (2022), 8, S. 1574-1583

The pentasaccharide Fondaparinux, a synthetic selective factor Xa inhibitor, is one of the safest anticoagulants in the heparin family that is recommended as an alternative drug for patients with hypersensitivity to other drugs such as heparin-induced thrombocytopenia (HIT). However, some observations of Fondaparinux-induced thrombocytopenia (FIT) have been reported while others claimed that FIT does not occur in patients with fondaparinux therapy, indicating that the mechanism of FIT remains controversial. Here, we utilized different methodologies including dynamic light scattering, immunosorbent and platelet aggregation assays, confocal laser scanning microscopy, and flow cytometry to gain insights into FIT. We found that at a certain concentration, Fondaparinux formed sufficient large and stable complexes with PF4 that facilitated binding of the HIT-like monoclonal KKO antibody and enhanced platelet aggregation and activation. We proposed a model to describe the role of Fondaparinux concentration in the formation of complexes with platelet factor 4 and how it promotes the binding of KKO. Our results clarify controversial observations of FIT in patients as each contains a dissimilar PF4:Fondaparinux concentration ratio.



https://doi.org/10.1021/acs.bioconjchem.2c00316
Chen, Li-Yu; Schirmer, Uwe; Widder, Miriam; Gruel, Yves; Rollin, Jérôme; Zipfel, Peter F.; Nguyen, Thi-Huong
Breast cancer cell-based ELISA: a potential material for better detection of heparin-induced thrombocytopenia antibodies. - In: Journal of materials chemistry, ISSN 2050-7518, Bd. 10 (2022), 38, S. 7708-7716

Heparin-induced thrombocytopenia (HIT) is caused by newly formed platelet-activating antibodies against complexes formed between platelet factor 4 (PF4) and heparin (H). HIT can result in life-threatening complications; thus, early detection of HIT antibodies is crucial for the treatment of the disease. The enzyme-linked immune absorbance assay (ELISA) for the identification of HIT antibodies is widely used in many laboratories, but in general, this test provides only ∼50% accuracy while other methods show multiple limitations. Here, we developed a new cell-based ELISA to improve the detection of HIT antibodies. Instead of immobilizing PF4 or PF4/H complexes directly onto a plate as in the standard ELISA, we added the complexes on breast cancer cells, i.e., cell line MDA-MB-231, and applied the same protocol for antibody detection. Using confocal laser scanning microscopy and flow cytometry for the characterization of bound complexes, we identified two types of HIT-mimicked antibodies (KKO and 1E12), which were able to differentiate from the non-HIT antibody (RTO). PF4-treated MDA-MB-231 cells allowed binding of HIT-mimicked antibodies better than PF4/H complexes. With human sera, the cell-based ELISA allowed better differentiation of clinically relevant from non-clinically relevant HIT antibodies as compared with the standard ELISA. Our findings provide a potential approach that contributes to the development of better assays for the detection of HIT antibodies.



https://doi.org/10.1039/D2TB01228F