Publications at the Department of Mathematics and Natural Sciences from 2019

Results: 900
Created on: Mon, 29 Apr 2024 16:43:17 +0200 in 4.1401 sec


Bartsch, Heike; Weise, Frank; Gomez, Houari Cobas; Gongora-Rubio, Mario Ricardo
Cost-effective sensor for flow monitoring in biologic microreactors. - In: IEEE sensors journal, ISSN 1558-1748, Bd. 21 (2021), 19, S. 21314-21321

https://doi.org/10.1109/JSEN.2021.3102262
Bracher, Johannes; Wolffram, Daniel; Deuschel, Jannik; Görgen, Konstantin; Ketterer, Jakob L.; Ullrich, Alexander; Abbott, Sam; Barbarossa, Maria Vittoria; Bertsimas, Dimitris; Bhatia, Sangeeta; Bodych, Marcin; Bosse, Nikos I.; Burgard, Jan Pablo; Castro, Lauren; Fairchild, Geoffrey; Fuhrmann, Jan; Funk, Sebastian; Gogolewski, Krzysztof; Gu, Quanquan; Heyder, Stefan; Hotz, Thomas; Kheifetz, Yuri; Kirsten, Holger; Krueger, Tyll; Krymova, Ekaterina; Li, Michael Lingzhi; Meinke, Jan H.; Michaud, Isaac J.; Niedzielewski, Karol; Ożaânski, Tomasz; Rakowski, Franciszek; Scholz, Markus; Soni, Saksham; Srivastava, Ajitesh; Zieliânski, Jakub; Zou, Difan; Gneiting, Tilmann; Schienle, Melanie
A pre-registered short-term forecasting study of COVID-19 in Germany and Poland during the second wave. - In: Nature Communications, ISSN 2041-1723, Bd. 12 (2021), 5173, S. 1-16

Disease modelling has had considerable policy impact during the ongoing COVID-19 pandemic, and it is increasingly acknowledged that combining multiple models can improve the reliability of outputs. Here we report insights from ten weeks of collaborative short-term forecasting of COVID-19 in Germany and Poland (12 October-19 December 2020). The study period covers the onset of the second wave in both countries, with tightening non-pharmaceutical interventions (NPIs) and subsequently a decay (Poland) or plateau and renewed increase (Germany) in reported cases. Thirteen independent teams provided probabilistic real-time forecasts of COVID-19 cases and deaths. These were reported for lead times of one to four weeks, with evaluation focused on one- and two-week horizons, which are less affected by changing NPIs. Heterogeneity between forecasts was considerable both in terms of point predictions and forecast spread. Ensemble forecasts showed good relative performance, in particular in terms of coverage, but did not clearly dominate single-model predictions. The study was preregistered and will be followed up in future phases of the pandemic.



https://doi.org/10.1038/s41467-021-25207-0
Grebinyk, Anna; Prylutska, Svitlana; Grebinyk, Sergii; Evstigneev, Maxim; Krysiuk, Iryna; Skaterna, Tetiana; Horak, Iryna; Sun, Yanfang; Drobot, Liudmyla; Matyshevska, Olga; Prylutskyy, Yuriy; Ritter, Uwe; Frohme, Marcus
Antitumor efficiency of the natural alkaloid berberine complexed with C60 fullerene in Lewis lung carcinoma in vitro and in vivo. - In: Cancer nanotechnology, ISSN 1868-6966, Bd. 12 (2021), 24, insges. 18 S.

Berberine (Ber) is a herbal alkaloid with pharmacological activity in general and a high anticancer potency in particular. However, due to its low bioavailability, the difficulty in reaching a target and choosing the right dose, there is a need to improve approaches of Ber use in anticancer therapy. In this study, Ber, noncovalently bound to a carbon nanostructure C60 fullerene (C60) at various molar ratios of the components, was explored against Lewis lung carcinoma (LLC).



https://doi.org/10.1186/s12645-021-00096-6
Hackenberg, Annika; Worthmann, Karl; Pätz, Torben; Keiner, Dörthe; Oertel, Joachim; Flaßkamp, Kathrin
Neurochirurgische Planung mittels automatisierter Bilderkennung und optimaler Pfadplanung :
Neurosurgery planning based on automated image recognition and optimal path design. - In: Automatisierungstechnik, ISSN 2196-677X, Bd. 69 (2021), 8, S. 708-721

Stereotactic neurosurgery requires a careful planning of cannulae paths to spare eloquent areas of the brain that, if damaged, will result in loss of essential neurological function such as sensory processing, linguistic ability, vision, or motor function. We present an approach based on modelling, simulation, and optimization to set up a computational assistant tool. Thereby, we focus on the modeling of the brain topology, where we construct ellipsoidal approximations of voxel clouds based on processed MRI data. The outcome is integrated in a path-planning problem either via constraints or by penalization terms in the objective function. The surgical planning problem with obstacle avoidance is solved for different types of stereotactic cannulae using numerical simulations. We illustrate our method with a case study using real MRI data.



https://doi.org/10.1515/auto-2021-0044
Hurmach, Vasyl V.; Platonov, Maksim O.; Prylutska, Svitlana V.; Scharff, Peter; Prylutskyy, Yuriy I.; Ritter, Uwe
C60 fullerene against SARS-CoV-2 coronavirus: an in silico insight. - In: Scientific reports, ISSN 2045-2322, Bd. 11 (2021), 17748, S. 1-12

Based on WHO reports the new SARS-CoV-2 coronavirus is currently widespread all over the world. So far > 162 million cases have been confirmed, including > 3 million deaths. Because of the pandemic still spreading across the globe the accomplishment of computational methods to find new potential mechanisms of virus inhibitions is necessary. According to the fact that C60 fullerene (a sphere-shaped molecule consisting of carbon) has shown inhibitory activity against various protein targets, here the analysis of the potential binding mechanism between SARS-CoV-2 proteins 3CLpro and RdRp with C60 fullerene was done; it has resulted in one and two possible binding mechanisms, respectively. In the case of 3CLpro, C60 fullerene interacts in the catalytic binding pocket. And for RdRp in the first model C60 fullerene blocks RNA synthesis pore and in the second one it prevents binding with Nsp8 co-factor (without this complex formation, RdRp can't perform its initial functions). Then the molecular dynamics simulation confirmed the stability of created complexes. The obtained results might be a basis for other computational studies of 3CLPro and RdRp potential inhibition ways as well as the potential usage of C60 fullerene in the fight against COVID-19 disease.



https://doi.org/10.1038/s41598-021-97268-6
Zhao, Xingxing; Zhang, Chenglin; Yang, Guowei; Wu, Yuhan; Fu, Qun; Zhao, Huaping; Lei, Yong
Bismuth selenide nanosheets confined in thin carbon layers as anode materials for advanced potassium-ion batteries. - In: Inorganic chemistry frontiers, ISSN 2052-1553, Bd. 8 (2021), 18, S. 4267-4275

Metal selenides as promising anode materials for potassium ion batteries (PIBs) have attracted great research attention. However, it is still a challenge to promote its practical application due to the unsatisfactory cyclability resulting from large volume variation and sluggish kinetics. Herein, we tackle this issue by focusing on a promising but undemonstrated anode, bismuth selenide for PIBs which possesses a high theoretical capacity and good electronic conductivity. Benefitting from the carbon layer coating, Bi2Se3C has the capability to inhibit self-aggregation and buffer the volume expansion, leading to outstanding potassium-ion storage capability. It exhibits a very high reversible capacity of 526 mA h g^-1 at 50 mA g^-1, as well as superior cyclability and rate capability while maintaining a high capacity of 214 mA h g^-1 at 1.0 A g^-1 after 1000 cycles. Furthermore, its fast and reversible ion storage mechanism was verified, which first involves conversion and subsequent alloying redox reactions. This work enriches the understanding and development of stable conversion/alloying-based anodes for high-performance potassium-ion batteries.



https://doi.org/10.1039/D1QI00672J
Kronfeld, Klaus-Peter; Ellinger, Thomas; Köhler, Michael
Micro flow photochemical synthesis of Ca-sensitive fluorescent sensor particles. - In: Engineering in life sciences, ISSN 1618-2863, Bd. 21 (2021), 8/9, S. 518-526

Fluorescence probes have widely been used for detecting and imaging Ca2+-enriched parts of cells but more rarely for quantitative determination of concentrations. In this study we show how this can be achieved by a novel approach using hydrogel particles. In a microfluidic co-flow arrangement spherical droplets were generated from an aqueous solution of acrylamide, N,N'-methylenebisacrylamide crosslinker and photoinitiator and subsequently photo-cured in situ yielding gel particles in a sub millimeter range. These particles were separated, dried under reduced pressure and re-swollen in water containing Rhod-5N tri potassium salt as calcium ion selective fluorescence probe. After that the particles were dried again and stored for further investigations. Upon exposure of dried particles to calcium chloride solutions they swell and take up Ca2+-ions forming a strong fluorescing complex with Rhod-5N. Thus, fluorescence intensity increases with calcium ion concentration. Up to ca. 0.50 mM the enhancement effect is strong and then becomes considerably weaker. The intensity-concentration-dependence is well described by an equation derived from the equilibrium of the formation of a 1:1 Ca2+:Rhod-5N complex. The particles allow for a fast optical determination of Ca2+-concentrations up to 0.50 mM in analyte volumes down to below 10 [my]L.



https://doi.org/10.1002/elsc.202100023
Köhler, Michael; Kluitmann, Jonas; Günther, Mike
Metal nanoparticles as free-floating electrodes. - In: Encyclopedia, ISSN 2673-8392, Bd. 1 (2021), 3, S. 551-565

Colloidal metal nanoparticles in an electrolyte environment are not only electrically charged but also electrochemically active objects. They have the typical character of metal electrodes with ongoing charge transfer processes on the metal/liquid interface. This picture is valid for the equilibrium state and also during the formation, growth, aggregation or dissolution of nanoparticles. This behavior can be understood in analogy to macroscopic mixed-electrode systems with a free-floating potential, which is determined by the competition between anodic and cathodic partial processes. In contrast to macroscopic electrodes, the small size of nanoparticles is responsible for significant effects of low numbers of elementary charges and for self-polarization effects as they are known from molecular systems, for example. The electrical properties of nanoparticles can be estimated by basic electrochemical equations. Reconsidering these fundamentals, the assembly behavior, the formation of nonspherical assemblies of nanoparticles and the growth and the corrosion behavior of metal nanoparticles, as well as the formation of core/shell particles, branched structures and particle networks, can be understood. The consequences of electrochemical behavior, charging and self-polarization for particle growth, shape formation and particle/particle interaction are discussed.



https://doi.org/10.3390/encyclopedia1030046
Köhler, Michael;
Challenges for nanotechnology. - In: Encyclopedia, ISSN 2673-8392, Bd. 1 (2021), 3, S. 618-631

The term "Nanotechnology" describes a large field of scientific and technical activities dealing with objects and technical components with small dimensions. Typically, bodies that are in-at least-two dimensions smaller than 0.1 [my]m are regarded as "nanobjects". By this definition, a lot of advanced materials, as well as the advanced electronic devices, are objects of nanotechnology. In addition, many aspects of molecular biotechnology as well as macromolecular and supermolecular chemistry and nanoparticle techniques are summarized under "nanotechnology". Despite this size-oriented definition, nanotechnology is dealing with physics and chemistry as well as with the realization of technical functions in the area between very small bodies and single particles and molecules. This includes the shift from classical physics into the quantum world of small molecules and low numbers or single elementary particles. Besides the already established fields of nanotechnology, there is a big expectation about technical progress and solution to essential economic, medical, and ecological problems by means of nanotechnology. Nanotechnology can only meet these expectations if fundamental progress behind the recent state of the art can be achieved. Therefore, very important challenges for nanotechnology are discussed here.



https://doi.org/10.3390/encyclopedia1030051
Lindt, Kevin; Gizatullin, Bulat; Mattea, Carlos; Stapf, Siegfried
Non-exponential 1H and 2H NMR relaxation and self-diffusion in asphaltene-maltene solutions. - In: Molecules, ISSN 1420-3049, Bd. 26 (2021), 17, 5218, insges. 35 S.
Im Titel sind "1" und "2" hochgestellt

The distribution of NMR relaxation times and diffusion coefficients in crude oils results from the vast number of different chemical species. In addition, the presence of asphaltenes provides different relaxation environments for the maltenes, generated by steric hindrance in the asphaltene aggregates and possibly by the spatial distribution of radicals. Since the dynamics of the maltenes is further modified by the interactions between maltenes and asphaltenes, these interactions - either through steric hindrances or promoted by aromatic-aromatic interactions - are of particular interest. Here, we aim at investigating the interaction between individual protonic and deuterated maltene species of different molecular size and aromaticity and the asphaltene macroaggregates by comparing the maltenes’ NMR relaxation (T1 and T2) and translational diffusion (D) properties in the absence and presence of the asphaltene in model solutions. The ratio of the average transverse and longitudinal relaxation rates, describing the non-exponential relaxation of the maltenes in the presence of the asphaltene, and its variation with respect to the asphaltene-free solutions are discussed. The relaxation experiments reveal an apparent slowing down of the maltenes’ dynamics in the presence of asphaltenes, which differs between the individual maltenes. While for single-chained alkylbenzenes, a plateau of the relaxation rate ratio was found for long aliphatic chains, no impact of the maltenes’ aromaticity on the maltene-asphaltene interaction was unambiguously found. In contrast, the reduced diffusion coefficients of the maltenes in presence of the asphaltenes differ little and are attributed to the overall increased viscosity.



https://doi.org/10.3390/molecules26175218